PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G087600.5.p
Common NamePRUPE_ppa016220mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 485aa    MW: 54417 Da    PI: 7.5413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G087600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11309355455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  Prupe.5G087600.5.p 309 NHVEAERQRREKLNHRFYLLRSVVPNV-----SKMDRSSLLADAVAYINQLK 355
                         799***********************6.....5*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-3722212IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.06E-16303368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.48E-13303359No hitNo description
PROSITE profilePS5088815.688305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-15309367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-9309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEAIISSCSS PNFCQENLGT FQQRLQFIFQ NRPEWWLYWI FWQSSKDSND QVSLSWAAGD  60
FRVNSDLASK RNNKVSNNHQ PKFGFNKKVT SREAEEALFD EDMADLEMRL VDHEDVTESE  120
WFYFYSVSLT QSFAAGHATN NILGRAFCSG GFVWLAGAHE LQFYECERVK EARMHGIQTL  180
VCIATPCGVL ELASLDVIKE DWGFVHLSKS LFGSDNNNNN NRVSQQKGSR EGNVLAPLLA  240
NGIFSGSQKE LTRQAGTKEA APFNIGGSSP ESLSGSVGNF TCENTGNTRS KKRRRSSNNG  300
ASRESSLLNH VEAERQRREK LNHRFYLLRS VVPNVSKMDR SSLLADAVAY INQLKAKVEE  360
LELKTQAQPQ NPKKVSVNNL DNQCSQSTSS IVDHHSSYNN TKVVPVEVDV KIMGSEAIIR  420
VQCQDQDYPY ARLMNALKGL GLQVYHASIS SVKELMIQDV VARVPYGFTS EEAMRTGIIK  480
RWHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-22112122192Transcription factor MYC3
4rqw_B2e-22112122192Transcription factor MYC3
4rs9_A2e-22112122192Transcription factor MYC3
4yz6_A2e-22112122192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238755.10.0PREDICTED: transcription factor bHLH14-like isoform X2
TrEMBLM5WX790.0M5WX79_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s11400.11e-131(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-59bHLH family protein